We get asked from time to time what is the best way to install a thermocouple on a solar collector during installation. While certain manufacturers include a thermal well in their collector this both solves a problem and causes a problem. The same manufactures that supply thermal wells advocate only installing glycol based systems. The thermal well is installed in or near the top header on one side of the collector. Since the well is only on one side of the collector this can lead to extra line runs on the roof to cross from one side of the array where the solar fluid is exiting the collectors to the other side of the array where the thermal well is located. This is not ideal. Additionally, some manufacturers will install wells that are required to be immersed in the solar fluid. Not bad for a glycol based system that is always wet but on a drainback system this doesn’t work particularly well.
Several of the domestic manufactures have taken the approach of not supplying any wells with the installer then simply using a strap clamp to strap the sensor to the manifold. This has the advantage of allowing you to install the sensor on either side of the collector so no extra wire run. The disadvantage of this approach is that the sensor is then farther away from the collector thus making timely temperature detection more difficult.
One solution to this problem is to simply take advantage of the rubber grommet as the clamp for holding the sensor (see picture).

With this scenario you then are able to install the sensor on either side of the collector as well as get a close temperature indication of what is going on inside the collector.
Another solution is to cut a hole in the back of the collector and through the insulation and then affix the thermocouple to the back side of one of the fins. This has the advantage of getting the temperature reading in the middle of the collector but the disadvantage of voiding most manufacturers warranties.